Will temperature and rainfall changes prevent yield progress in Europe?

Concerns about the effects of global warming on crop yields have been raised due to stagnating yield progress in recent years. However, an understanding of the effects of changes in temperature and rainfall throughout the crop cycle on historical yield progress is lacking in Europe (EU). In this study, positive wheat, barley, rice, and maize yield progress in the EU (1961–2019) was significant, with rates of 0.05, 0.04, 0.05, and 0.07 Tha−1year−1, for the four crops respectively. Much of this progress has been sustained by Eastern European countries (EE), which had the highest yield progress rates. On average, in the case of wheat and barley, a temperature increase of 1°C in the winter resulted in yields increasing by +0.33 Tha−1 in EE. This was potentially due to decreasing cold damage and improved photosynthesis and vegetative growth, supporting positive yield progress. Recent historical (2001–2019) rates of wheat, barley, rice, and maize yield progress were positive in all EU regions except Western Europe (WE), barley in Southern Europe (SE) and wheat in Northern Europe (NE). Stagnated wheat, barley and rice yields in WE were not explained by temperature or rainfall using direct correlations of observed data. However, May and July temperatures were associated with wheat yields in NE (−0.30 Tha−1°C−1), barley in SE (−0.14 Tha−1°C−1) and maize in WE and SE (−0.42 and −0.39 Tha−1°C−1). With increasing temperatures becoming less than optimal for photosynthesis, reducing grain filling duration and increasing drought episodes, crop yields have stagnated for wheat in NE and barley in SE. With consistent increases in temperature and water evaporative demand expected in the future, the interplay among genetic adaptation, increased crop cycle duration, drought tolerance, sowing dates, smart irrigation and sustainable practices may require thorough regional testing to maximise the yields of wheat, barley and maize in Europe.info:eu-repo/semantics/publishedVersio

Insight. Transgenic solutions to increase yield and stability in wheat: shining hope or flash in the pan?

Second-generation transgenic crops have the potential to transform agriculture, but progress has been limited, and particularly so in wheat where no transgenic cultivar has yet been approved. Taking on the challenge, González et al. (2019) report that transgenic wheat lines carrying a mutated version of the sunflower transcription factor (HaHB4), belonging to the homeodomain-leucine zipper family (HD-Zip I), had increased yield and water use efficiency across a range of environments, with particular benefits under stress. It is an important step forward in an area where progress is urgently needed, though it is too early to claim that transgenic wheat will form the backbone of a second Green Revolution. To meet the growing demand for food, together with the challenges imposed by climate change, substantial improvements in yields of major crops are needed. This includes wheat, where globally the multi-year tendency for growth in yield is decreasing (Passioura, 2012) or even stagnating (Driever et al., 2017). Current and expected future relative rates of progress in yield potential and drought adaptation in wheat are a matter of real concern, and insufficient to meet the projected demand for cereals by 2050 (Hall and Richards, 2013). There are three major challenges: increasing yield potential, protecting yield potential from different types of stress, and increasing resource use efficiency to ensure sustainability (Hawkesford et al., 2013)

Stay-green in spring wheat can be determined by spectral reflectance measurements (normalized difference vegetation index) independently from phenology

The green area displayed by a crop is a good indicator of its photosynthetic capacity, while chlorophyll retention or ‘stay-green’ is regarded as a key indicator of stress adaptation. Remote-sensing methods were tested to estimate these parameters in diverse wheat genotypes under different growing conditions. Two wheat populations (a diverse set of 294 advanced lines and a recombinant inbred line population of 169 sister lines derived from the cross between Seri and Babax) were grown in Mexico under three environments: drought, heat, and heat combined with drought. In the two populations studied here, a moderate heritable expression of stay-green was found–when the normalized difference vegetation index (NDVI) at physiological maturity was estimated using the regression of NDVI over time from the mid-stages of grain-filling to physiological maturity–and for the rate of senescence during the same period. Under heat and heat combined with drought environments, stay-green calculated as NDVI at physiological maturity and the rate of senescence, showed positive and negative correlations with yield, respectively. Moreover, stay-green calculated as an estimation of NDVI at physiological maturity and the rate of senescence regressed on degree days give an independent measurement of stay-green without the confounding effect of phenology. On average, in both populations under heat and heat combined with drought environments CTgf and stay-green variables accounted for around 30% of yield variability in multiple regression analysis. It is concluded that stay-green traits may provide cumulative effects, together with other traits, to improve adaptation under stress further

Allelic Variation at the Vernalization Response (Vrn-1) and Photoperiod Sensitivity (Ppd-1) Genes and Their Association With the Development of Durum Wheat Landraces and Modern Cultivars

Wheat adaptability to a wide range of environmental conditions is mostly determined by allelic diversity within genes controlling vernalization requirement (Vrn-1) and photoperiod sensitivity (Ppd-1). We characterized a panel of 151 durum wheat Mediterranean landraces and 20 representative locally adapted modern cultivars for their allelic composition at Vrn-1 and Ppd-1 gene using diagnostic molecular markers and studied their association with the time needed to reach six growth stages under field conditions over 6 years. Compared with the more diverse and representative landrace collection, the set of modern cultivars were characterized by a reduction of 50% in the number of allelic variants at the Vrn-A1 and Vrn-B1 genes, and the high frequency of mutant alleles conferring photoperiod insensitivity at Ppd-A1, which resulted on a shorter cycle length. Vrn-A1 played a greater role than Vrn-B1 in regulating crop development (Vrn-A1 > Vrn-B1). The results suggest that mutations in the Vrn-A1 gene may have been the most important in establishing the spring growth habit of Mediterranean landraces and modern durum cultivars. The allele Vrn-A1d, found in 10 landraces, delayed development. The relative effects of single Vrn-A1 alleles on delaying the development of the landraces were vrn-A1 = Vrn-A1d > Vrn-A1b > Vrn-A1c. Allele vrn-B1 was present in all except two landraces and in all modern cultivars. The null allele at Ppd-A1 (a deletion first observed in the French bread wheat cultivar ‘Capelle-Desprez’) was found for the first time in durum wheat in the present study that identified it in 30 landraces from 13 Mediterranean countries. Allele Ppd-A1a (GS105) was detected in both germplasm types, while the allele Ppd-A1a (GS100) was found only in modern North American and Spanish cultivars. The relative effect of single Ppd-A1 alleles on extending phenological development was Ppd-A1(DelCD) > Ppd-A1b > Ppd-A1a (GS105) > Ppd-A1a (GS100). Sixteen Vrn-1+Ppd-1 allelic combinations were found in landraces and six in modern cultivars, but only three were common to both panels. Differences in the number of days to reach anthesis were 10 days in landraces and 3 days in modern cultivars. Interactive effects between Vrn-1 and Ppd-1 genes were detected.info:eu-repo/semantics/publishedVersio

Multi-environment QTL analysis using an updated genetic map of a widely distributed Seri × Babax spring wheat population

Seri/Babax spring wheat RIL population was developed to minimize the confounding effect of phenology in the genetic dissection of abiotic stress traits. An existing linkage map (< 500 markers) was updated with 6470 polymorphic Illumina iSelect 90K array and DArTseq SNPs to a genetic map of 5576.5 cM with 1748 non-redundant markers (1165 90K SNPs, 207 DArTseq SNPs, 183 AFLP, 111 DArT array, and 82 SSR) assigned to 31 linkage groups. We conducted QTL mapping for yield and related traits phenotyped in several major wheat growing areas in Egypt, Sudan, Iran, India, and Mexico (nine environments: heat, drought, heat plus drought, and yield potential). QTL analysis identified 39 (LOD 2.5–23.6; PVE 4.8–21.3%), 36 (LOD 2.5–15.4; PVE 2.9–21.4%), 30 (LOD 2.5–13.1; PVE 3.6–26.8%), 39 (LOD 2.7–14.4; PVE 2.6–15.9%), and 22 (LOD 2.8–4.8; PVE 6.8–12.9%) QTLs for grain yield, thousand-grain weight, grain number, days to heading, and plant height, respectively. The present study confirmed QTLs from previous studies and identified novel QTLs. QTL analysis based on high-yielding and low-yielding environmental clusters identified 11 QTLs (LOD 2.6–14.9; PVE 2.7–19.7%). The updated map thereby provides a better genome coverage (3.5-fold) especially on the D genome (4-fold), higher density (1.1-fold), and a good collinearity with the IWGSC RefSeq v1.0 genome, and increased the number of detected QTLs (5-fold) compared with the earlier map. This map serves as a useful genomic resource for genetic analyses of important traits on this wheat population that was widely distributed around the world.info:eu-repo/semantics/acceptedVersio

Unravelling the relationship between adaptation pattern and yield formation strategies in Mediterranean durum wheat landraces

Understanding the environmental and genetic factors behind the adaptation of landraces to different environments may help design breeding strategies and to promote yield improvement. Based on previous results that showed a differential frequency of alleles associated with important agronomic traits in landraces that originated in the east (EM) and the west (WM) of the Mediterranean Basin, this study analysed their patterns of adaptation and the influence this adaptation has on yield formation strategies. Thirteen and thirty-one genotypes selected according to their membership coefficient (q>0.900) from the EM and the WM genetic subpopulations, respectively, were tested during six crop seasons under rainfed Mediterranean conditions. Yearly yields ranged from 3173 to 4917 kg/ha. EM landraces showed more spikes per unit area, while WM ones showed consistently taller plants, larger cycle length to anthesis, a shorter grain filling period, a higher grain filling rate and heavier grains. The contrasting pattern of adaptation of the two subpopulations was based on a differential ability to use the water available before and after anthesis. The yield of EM landraces, originated in the warmest and driest area of the Mediterranean basin, relied mostly on water input before anthesis, which was beneficial for spike production and for the accumulation of water-soluble carbohydrates in the stems prior to anthesis, to be remobilized to grains during grain filling. WM landraces performed better in environments with high water input during grain filling, which was efficiently used to increase grain setting and produce heavy grains. EM landraces could be used in breeding to improve the adaptation of modern varieties to terminal drought.info:eu-repo/semantics/publishedVersio

Time-Lagged Correlation Analysis of Shellfish Toxicity Reveals Predictive Links to Adjacent Areas, Species, and Environmental Conditions

This work was funded by the project “MATISSE: A machine learning-based forecasting system for shellfish safety” (DSAIPA/DS/0026/2019). The work was also supported by national funds through Fundação para a Ciência e a Tecnologia (FCT) with references CEECINST/00102/2018, CEECIND/01399/2017, UIDB/04326/2020, UIDP/04326/2020 and LA/P/0101/2020 (CCMAR), UIDB/04516/2020 (NOVA LINCS), UIDB/00297/2020 (NovaMath), and UIDB/50021/2020 (INESC-ID). This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 951970 (OLISSIPO project).Diarrhetic Shellfish Poisoning (DSP) is an acute intoxication caused by the consumption of contaminated shellfish, which is common in many regions of the world. To safeguard human health, most countries implement programs focused on the surveillance of toxic phytoplankton abundance and shellfish toxicity levels, an effort that can be complemented by a deeper understanding of the underlying phenomena. In this work, we identify patterns of seasonality in shellfish toxicity across the Portuguese coast and analyse time-lagged correlations between this toxicity and various potential risk factors. We extend the understanding of these relations through the introduction of temporal lags, allowing the analysis of time series at different points in time and the study of the predictive power of the tested variables. This study confirms previous findings about toxicity seasonality patterns on the Portuguese coast and provides further quantitative data about the relations between shellfish toxicity and geographical location, shellfish species, toxic phytoplankton abundances, and environmental conditions. Furthermore, multiple pairs of areas and shellfish species are identified as having correlations high enough to allow for a predictive analysis. These results represent the first step towards understanding the dynamics of DSP toxicity in Portuguese shellfish producing areas, such as temporal and spatial variability, and towards the development of a shellfish safety forecasting system.publishersversionpublishe

Desempenho de misturas recicladas temperadas

Um dos principais desafios que a sociedade enfrenta nos dias de hoje são as preocupações com o meio ambiente sendo um dos objetivos mais procurado a diminuição do consumo de combustíveis fósseis e das emissões para a atmosfera.N/

Agronomic performance and remote sensing assessment of organic and mineral fertilization in rice fields

Introduction: Rice heavily relies on nitrogen fertilizers, posing environmental, resource, and geopolitical challenges. This study explores sustainable alternatives like animal manure and remote sensing for resource-efficient rice cultivation. It aims to assess the long-term impact of organic fertilization and remote sensing monitoring on agronomic traits, yield, and nutrition. Methods: A six-year experiment in rice fields evaluated fertilization strategies, including pig slurry (PS) and chicken manure (CM) with mineral fertilizers (MIN), MIN-only, and zero-fertilization. Traits, yield, spectral responses, and nutrient content were measured. Sentinel-2 remote sensing tracked crop development. Results: Cost-effective organic fertilizers (PS and CM) caused a 13% and 15% yield reduction but still doubled zero-fertilization yield. PS reduced nitrogen leaching. Heavy metals in rice grains were present at safe amounts. Organic-fertilized crops showed nitrogen deficiency at the late vegetative stages, affecting yield. Sentinel-2 detected nutrient deficiencies through NDVI. Discussion: Organic fertilizers, especially PS, reduce nitrogen loss, benefiting the environment. However, they come with yield trade-offs and nutrient management challenges that can be managed and balanced with reduced additional mineral applications. Sentinel-2 remote sensing helps manage nutrient deficiencies. In summary, this research favors cost-effective organic fertilizers with improved nutrient management for sustainable rice production.This work was commissioned and funded by the Catalan Ministry of Climate Action, Food and Rural Agenda, by the projects TED2021-131606B-C21 and PLEC2021-007786 of the Spanish Ministry of Economy and Competitiveness and by the CROPDIVA (Climate Resilient Orphan croPs for increased DIVersity in Agriculture) project through the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 101000847. The funders had no role in the study design, data collection and analysis, decision to publish, or manuscript preparation.info:eu-repo/semantics/publishedVersio

Molybdenum Induces the expression of a protein containing a new heterometallic Mo-Fe cluster in desulfoVibrio alaskensis

Biochemistry. 2009 Feb 10;48(5):873-82. doi: 10.1021/bi801773t.The characterization of a novel Mo-Fe protein (MorP) associated with a system that responds to Mo in Desulfovibrio alaskensis is reported. Biochemical characterization shows that MorP is a periplasmic homomultimer of high molecular weight (260 +/- 13 kDa) consisting of 16-18 monomers of 15321.1 +/- 0.5 Da. The UV/visible absorption spectrum of the as-isolated protein shows absorption peaks around 280, 320, and 570 nm with extinction coefficients of 18700, 12800, and 5000 M(-1) cm(-1), respectively. Metal content, EXAFS data and DFT calculations support the presence of a Mo-2S-[2Fe-2S]-2S-Mo cluster never reported before. Analysis of the available genomes from Desulfovibrio species shows that the MorP encoding gene is located downstream of a sensor and a regulator gene. This type of gene arrangement, called two component system, is used by the cell to regulate diverse physiological processes in response to changes in environmental conditions. Increase of both gene expression and protein production was observed when cells were cultured in the presence of 45 microM molybdenum. Involvement of this system in Mo tolerance of sulfate reducing bacteria is proposed